‘Seed Hunter’ reaps success

又是一篇讲种质资源科学家的新闻文章,一个来自ICARDA的搞大麦资源的科学家叫Dr Ken Street的故事。呵呵,来自http://www.queenslandcountrylife.com/,原文链接地址http://sl.farmonline.com.au/news/nationalrural/grains-and-cropping/general/seed-hunter-reaps-success/1628938.aspx?storypage=0

NND,里面又提到了中国,说从中国和巴西搞资源实在是太难了,哈哈哈哈

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‘Seed Hunter’ reaps success

GRAHAM FULLER
THE ‘Seed Hunter’ of recent television fame gave an international audience at last week’s 14th Barley Technical Symposium an insight into his work which continues to attract worldwide interest.Dr Ken Street, who works for the International Centre for Agricultural Research in the Dry Areas (ICARDA), based in Aleppo, Syria, was in top form, promising delegates that he was not going to “blow your heads away with high-browed science” when talking about his work.

It’s topical because it neatly dovetails with the on-going climate change debate, requiring existing commercial crops be scrutinised to see whether more resistance can be bred into them by accessing ancient crop varieties which still exist in some of the remotest parts of the world.

The idea is to seek out as many variations as possible in the hope that key traits like a plant’s ability to thrive in harsh temperatures using less water, for instance, can be bred from the genes stored in seed banks around the world.

The Seed Hunter’s work is taking place against a backdrop of exploding global populations, widespread loss of arable farmland, requiring researchers like Dr Street to look further afield in his bid to seek out “novel genes” able to deliver genetic improvements.

Much of his efforts are being directed towards encouraging the plant-breeding community to make greater utilisation of gene banks which mostly will release their material free of charge, although it is more difficult to obtain germplasm from countries like China and Brazil, for example.

Nevertheless, Dr Street remains undaunted, conceding there is duplication – probably in the order of 35 percent when it come to barley – within seed banks around the world.

“Getting what you want out of a gene bank is a little bit like looking for the proverbial needle…so the question becomes, how can we rationalise the search, or the trait we are looking for?” he said.

The point being made here is that it really has been “a matter of luck” when a plant breeder makes a specific request of a gene bank.

“What is needed is a repeatable and rational method to improve that flow of useful genes into the wider community,” Dr Street said.

Increasingly, he is focusing his attention on an approach known as FIGS (Focused Identification of Germplasm Strategy).

It’s all about assessing the environmental influences acting on plant populations, tracking their genetic variations in the quest for sought-after traits which might range from seed quality to dormancy issues, to name but a few.

Today, increasing emphasis is being placed on geo-referencing each collection site so all the related agri-climatic factors can be minutely detailed – to see how temperature, for instance, may have influenced the well-being of plants in some far away paddock.

Journeying to countries like Tajikistan, Dr Street said he came across a rare wheat strain being curated by a family in an extremely remote district.

“They were very poor and probably will never see the benefit of those genes but they were happy to give them across – and gave us a nice meal as well,” he said.

And the discovery of a boron-tolerant wheat gene in South Australia is another example of the value of seed banks, according to Dr Street.

Meanwhile, FIGS also has been deployed across north Africa and central Asia, scoring a successful outcome in finding a strain of wheat that is resistant to Sunn Pest, described as “a nasty little bug” that kills juvenile cereal plants, also destroying grain quality.

Dr Street urged plant breeders globally to forge closer links with ICARDA.

“We will work with you to help you craft a set of materials that you won’t have to screen more than you should,” he said.

Buoyed by the current progress of FIGS, Dr Street accepts there is still room to improve its methodology.

“But the more we use it, the better we will we get,” he said.

Preserving the Past to Protect Our Future

刚在博客右下角的google RSS看到的一篇科普新闻文章,ARS信息部门的头头写的他们的一个科学家在厄瓜多尔做的资源保护工作。个人觉得其标题取得不错,“保存过去以保护未来”,就像原来《走进科学》当年给我们做一期节目《寻找失落的基因-中国国家种质库》(详见./oldblog/article.asp?id=138)一个意思,呵呵。有时英文比中文更好表达意思,像这个标题,我就想了很久,也没能想出一个完美的中文村题。

该文还是给了我们一些有益的启示的。作物种质资源保护工作是一项比较难以开展的工作,多数古老的农家品种一般都栽培在经济发展相对比较落后、交通闭塞的地区,随着经济的发展,这些地区农业人口纷纷外出务工,农业人口减少,地越种越少,再加上这些老品种在栽培经济性方面普遍不如商业品种,其生存形势是岌岌可危。虽然我们国家在过去的几十年里进行过大规模的资源考察和征集工作,但收集到的资源数量应该还是远远少于实际存在资源数的,这一点能明显从我国农作物资源分布图中看出来,比如说云南地区的资源分布就明显与实际情况不符,后藏地区资源如此众多是因为开展过一次大规模的西藏地区农作物考察收集工作,效果极其明显。所以,如何结合当地经济发展的议题开展资源保护与抢救性收集工作应是当前资源工作的重要内容。很明显的一点,有价值的东西才能存在,资源只有得到利用才会得到更好的保护与发展。像文中提到的充分利用安第斯山区特色作物资源进行特色农产品深加工开发、手工艺品开发和特色农家旅游等就是十分好的借鉴。这样既保护了当地作物多样性,又为当地百姓谋得一条特色经济发展之路。

crop
中国主要农作物种质资源地理分布(the Atlas of Chinese main crops germplasm resources)

中国主要农作物种质资源地理分布图(来源于http://www.cgris.net

文章里的中文是我的注。

以下资料来源于http://www.swnewsherald.com,原文链接为http://www.swnewsherald.com/online_contentcrf/2009/09/essept09_3crops.php,

作者为SANDY MILLER HAYS, Agricultural Research Service

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Preserving the Past to Protect Our Future

By SANDY MILLER HAYS, Agricultural Research Service
Agricultural research isn’t all “sows, cows and plows,” with a few microscopes and DNA sequencers thrown in. Just ask Karen Williams.
She’s a botanist in the Plant Exchange Office of the Agricultural Research Service (ARS) National Germplasm Resources Laboratory in Beltsville, Md., right outside of Washington, D.C. But when Dr. Williams wants to get out town, she’s not thinking about Philadelphia or New York. Her “getaway” is the town of Cotacachi, Ecuador, in the heart of what some consider one of the cradles of world agriculture.
That’s where Dr. Williams works with an international team of scientists to help conserve traditional crops and, at the same time, contribute to the livelihoods of the local people.//说是说替人保护资源,造福当地人,然后呢。。。看下面

In the communities around Cotacachi, tucked away in the northern Andean highlands of Ecuador, people have farmed for thousands of years. The crops they grow are both familiar and not familiar — yes, there’s corn, but there are 30 varieties of it. Beans? The Quichua-speaking farmers and backyard gardeners have 40 varieties.  //丰富的资源啊,看上的是这些东西
These native crops can be an untapped treasure trove for scientists seeking solutions to modern American agriculture’s problems. Often, an ancient version of a crop contains genes that can help a modern version of that same crop in the United States overcome a pest or disease. It’s just a matter of tapping into those long-ago genetics and incorporating the needed genes into a plant breeding program that melds old with new. //利用这些古老资源所蕴含的丰富基因解决美国现代农业生产中的重要问题,这才是真正目的
But in Cotacachi, these ancient crops are more than just a genetic resource; they’re a way of life and the basis of food security. Yet, as has happened in many rural areas, including in the United States, life is changing in Cotacachi. Many families now rely on income from off the family farm, and the men often work away from those farms.
This is where Dr. Williams comes in. She’s been going to Ecuador since 1995, when she first went there to help reestablish Ecuador’s national peanut germplasm collection, fill gaps in the U.S. Department of Agriculture (USDA) peanut germplasm collection, and strengthen U.S.-Ecuadorian collaborations in genetic resources.
But her mission has expanded beyond that in the ensuing years. In partnership with an indigenous community organization called the Union of Indigenous and Peasant Communities (UNORCAC); Bioversity International, and the Ecuadorian National Agricultural Research Institute (INIAP) — the equivalent of ARS in Ecuador — she’s helped set up and now advises a program designed to promote conservation and increase use of local crops in the area. This program is funded in large part by USDA’s Foreign Agricultural Service.
What’s been accomplished? Scientists have preserved samples of the area’s genetic treasure trove in the National Germplasm Bank at the INIAP Santa Catalina Experiment Station near Quito. Farmers worked with the scientists to evaluate the local varieties of crops in a community garden in Cotacachi, and a catalogue was produced to document the vastness of the diversity. Seed fairs give farmers the chance to display and exchange crop varieties.
A food processing plant has been built to develop and package salsas, marmalades and other products made from the local crops. There’s a community-run ethnobotanical garden that provides local midwives with medicinal plants, helps educate local schoolchildren about their cultural heritage, and generates income from visitors coming to see the diversity of local Andean plants.  //为当地农业经济作贡献
The project has financed construction of rustic rural lodges owned by local families who offer lodging to those visitors. Visitors can learn about traditional crops and farm practices as the families prepare meals made with the yields of their dooryard gardens. The much-needed income that comes from the visitors helps encourage continuing conservation of the traditional crops. //类似于“农家乐”的经营项目
Local women have formed cooperatives that use the crops to make a variety of items offered for sale to tourists: handcrafted necklaces made from native variegated lima beans called “tortas,” for example, and traditional sandals and decorative weavings from the fiber of the cabuyo plant, a relative of agave.
All this activity helps ensure the continuation of those ancient crops, so important to the people of Cotacachi, and to the continued success of the crops that we count on to feed ourselves in this country. And it’s definitely not “just another day in the lab” for Dr. Karen Williams!

GRIN-Global的一些情况

想写一篇各国作物种质资源信息系统发展情况的综述,看看大家都是什么水平、有什么货、货色怎么样,然后做一些横向的比较,以决定我们的以后怎么改进,于是就先上了美国的GRIN(Germplasm Resources Information Network),看到了他们的一篇论文,GRIN-Global: An International Project to Develop a Global Plant Genebank and Information Management System,才了解到现在他们有GRIN-Global这样一个项目。

GRIN-Global简称G-G,是USDA-ARS、Global Crop Diversity TrustBioversity International三家合作开发并计划全球部署的新一代开放源码的免费种质资源信息系统,采用Visual Studio 2008 Express开发,.net 3.5框架,数据库用Sql Server 2008 Express、Oracle Express或是Mysql/PostgreQL,还真是全免费了,哈哈,符合为发展中国家而设计的初衷。系统采用三层结构设计,数据层、业务层和表现层,使用Web Services实现表现层与业务层之间的松散耦合。系统可脱机运行也可联机运行,有中央数据库,本地数据库与中央数据库之间可以进行数据交换。因此,系统开发分成管理员工具和共享网站两部分,管理员工具可以实现脱机和联机对数据的操作。根据他们的时间表,整个系统将于明年年底前开发测试完毕并交付使用。资金上,总共是$2.3百万,TRUST好像给了$1.4百万,其余$90万就不知道是谁家给的了。

这个项目的设计与我对新CGRIS 的设计想法是基本一致的,我的设想是,建立一个全国范围内统一的作物种质资源信息系统,采用统一的标准和软件体系,标准我们已经制定了,系统在理论上是可以通过行政指令方式全国推行的,国家理应要对资源进行统一管理。系统采用基于Web Services的集中与分布式相结合的架构,有一个中央数据库,就设在我们这里,客户端有web和PC程序,共性的信息或全部信息汇交到中央数据库,客户端依据授权下载部分或全部数据。这是信息共享部分,而种质库管理部分,G-G似乎只有分发功能,我希望能囊括种质收集、引种、整理、鉴定、评价、保存、分发和利用的整个工作流程,全面实现种质资源工作的信息化。这个体系应该是十分的庞大了,因为我只是处于概念设计阶段,而没进入实质设计,困难可能比我想像的要大得多,这一点随后得到了印证。

我查看G-G的文档,并没有太多系统设计资料,有一个数据字典的草稿,以及GRIN的数据字典,不用想,基本上就是照搬GRIN的。我原来没怎么注意过美国人的这个东西,今天一看不得了了,人家做得真TM细致,我不由得汗颜,咱的工作做得太糙了。要把我们的数据结构完整设计出来,做细致了,这工作量相当大,问题也会很多,现在的标准和描述规范还得做修改才行。

我想,这今后三年就做这个工作算了,工作量肯定是算得上,创新性方面,原始创新肯定是没有,基本属于整合创新,够不够博士标准,还有待专家们考量了。

其实我一想,这三家凑在一起做这项工作,其目的一方面是帮助不发达国家管理好他们的资源,更重要的一个方面其实就是搞清楚使用该软件的国家有些什么资源,掌握其信息资源,想要实物的时候再去“拿”就方便了。也许我是小人之心了,不过这些组织是绝不会干什么亏本买卖的,打着促进共荣、保护地球的旗子抢资源,不过,极不发达国家的资源交给他们保存和开发,也没什么坏处,比被他们自己糟蹋了强。

下午我联系了一下Bioversity International东亚办公室的张宗文老师,他跟我说了一些情况,说7月份在泰国开过一个会,我猛的想起来老板跟我说过泰国有会,但他没说是跟这个有关啊,要不我就去了,呵呵。

948计划自九五以来的情况

948据我了解,应该是从国外引进了不少作物种质资源,但信息汇交到我们这里的很少很少,大量信息基本上还是在引进人的手里或是递给农业部的报告里,离信息为人所知,实物被应用到研发生产中还有段距离。一是与机制有关系,各部门研究机构之间的配合有大量问题,这个就不多说了;二是共享平台也有问题,我所指的平台是指我们这块,行业内的许多人也还不知道我们有个种质信息网,在引进资源信息方面,唯一的引种数据库也多年没更新了,究其原因,我也不想过多探讨,无非是没项目资金支持,干了没好处,但是我想这部分理应成为我们的日常工作,需要的技术含量不多,但是过程比较长,经过部门也多,实验也需要经费,希望国家能对这块基础性工作能实现常态化的稳定投资,做基础性工作的人也就能安心的做这些无法以发表论文、获取奖励来计量和考核的工作了,而不用成天琢磨着如何才能拿项目维持人的生存,乃至资源的生存。

——————————–又是一条美丽的分割线———————————

农业部新闻办公室25日15时举行新闻发布会,向媒体介绍国际先进农业科学技术计划(简称“948计划”)自“九五”启动实施以来有关情况,并回答记者提问。

农业部科技教育司巡视员王衍亮在发布会上介绍了948计划取得的四个方面主要成效:

一是引进了一大批动植物优异种质资源,通过材料和种质创新,培育了大量适合我国不同类型生态区的动植物新品种,提升了我国农业的综合生产能力。

从作物种质资源方面看,截止2008年,共引进粮食、棉花、油料、糖料、水果、蔬菜、牧草、花卉、微生物和动物等优良品种、自交系、亲本和种质材料8万余份,挖掘出高产、优质、抗病虫、抗逆的育种材料近50万份,培育新品种500多个,累计推广14亿亩以上,为农业生产提供了强有力的技术支撑。目前,直接推广面积达100万亩以上的国外水稻品种有19个,推广面积达1000万亩以上的国外小麦品种有6个,从日本、巴西、美国和埃及引进的红富士苹果、旱稻、玉米、棉花都已在农业生产上大面积应用,效果非常显著。

从动物种质资源方面看,引进了一大批名特优稀畜禽品种资源。我们熟悉的肉用波尔山羊是从澳大利亚引进的,瘦肉型猪、杜洛克、汉普夏等种猪是从丹麦、奥地利、英国和美国引进的,皮埃蒙特肉牛是从意大利引进的,长毛兔和肉用兔是从德国引进的。这些畜牧种质资源除有些直接用于生产外,还用它们进行国内品种改良,培育出中国美利奴绵羊、中国黑白花奶牛、草原红牛、新疆褐牛、三江白猪、北京白鸡、哈尔滨白鸡等一大批优异的畜禽新品种。

二是通过引进与创新产业发展关键技术,推动了我国农业产业的转型升级,提高了人民的生活水平。

“948”计划围绕主要粮油作物和特色农产品生产加工等领域引进了一大批先进技术,经过消化吸收再创新和推广应用,有力促进了农业产业结构调整和农民增收,丰富了“肉蛋奶”、“瓜果菜”的市场供应。这里可以给大家举几个例子。譬如:柑橘产业的发展,上世纪90年代后期,我国的柑橘产业出现结构性过剩、价格下降、效益下滑。主要原因有三个方面,一是栽培品种的成熟期多集中在10~12月;二是品种结构不合理,我国栽培类型以宽皮橘为主,比例达到65%;三是产后处理落后,导致一流的内质、二流的外观、三流的价格,果品出口比例偏低。针对这些问题,948项目从1997年开始支持华中农大邓秀新教授带领的科研团队引进国外不同季节成熟的品种以优化结构。通过项目的实施,使我国柑橘的早、晚熟品种和产量显著增加,该项目在主产区先后建立了脐橙、甜橙、温州蜜柑等生产基地,实现了我国柑橘品种的更新换代和产业升级,为增产增收与扩大出口提供了有力的支撑。项目重点实施地区之一的赣南脐橙产区,已成为我国脐橙的新兴生产基地和出口东南亚的主要基地。为解决三峡库区脐橙早采的问题,项目引进了留树保鲜技术,在不增加种植面积和不更换品种的情况下,可以将已成熟的柑橘果实留在树上2-3月,并根据三峡库区的特点筛选了适合该技术的柑橘类型、适合的挂果量和挂果时间,避开柑橘销售高峰,实现鲜果的周年供给,有效增加了库区果农的收入。

又譬如:蛋品加工技术。针对我国蛋品加工技术落后、加工比例过低、产品结构单一等问题,948项目支持北京德清源集团和湖南农业大学蛋品研究所联合引进了国外核心技术与装备,攻克了壳膜高效环保分离、碳酸钙转化有机钙等技术难点,开发了洁蛋、液体蛋等一系列新产品供应市场;

再譬如:肉品加工技术。针对我国肉类生产存在的肉类品质和卫生安全控制技术落后、肉类产品追溯技术缺乏等问题,948项目支持南京农业大学和江苏雨润集团联合从国外引进了肉品跟踪追溯技术和在线检测等先进技术,通过消化吸收再创新,初步建立了我国肉品全程质量管理体系,提升了我国肉品综合生产能力和市场竞争力。

三是通过动植物疫病防控技术的引进,增强了我国抵御重大动植物疫病风险的能力。

随着社会的发展和国际交流活动的日益增多,物种的跨国界、跨区域间转移越来越频繁,客观上增加了动植物疫病发生、传播和控制的风险。从“九五”开始,“948”计划每年都立项支持动植物疫病防控技术的引进,目前已经从世界上20多个国家引进了多种动植物疫病的检测和综合防治技术。早在1998年,948项目就支持中国农业科学院哈尔滨兽医研究所开始引进并研发“禽流感防治技术”,几乎引进了全部已知的135个毒株,并开展了深入研究,这些储备的研究成果处于国际先进水平,研制的疫苗为国内有效防控禽流感疫情传播发挥了决定性作用,并支持了周边有关国家。由于提前立项开展技术引进,技术储备充足,使得其它重大的动物疫病如猪兰耳病、链球菌病等防控工作顺利开展。

Ug99是1999年在乌干达发现的一种致毒性极强的秆锈病新小种,对全球小麦生产危害极大,感染后将减产20%左右,现已传播至中东地区。为有效应对其危害,948项目支持中国农科院作物所、植保所提前开展秆锈病的防控技术研究,现已将我国冬春麦区的792份主栽品种和优异高代品系在肯尼亚进行了抗病性鉴定,先后筛选出15个抗病品种,既摸清了国内品种的家底,又为防止Ug99扩散提供了品种基础。

四是通过搭建国际科技合作交流平台,开辟了农业科技交流与合作的新渠道,培育出一支具有国际竞争力的农业科研队伍,提升了我国农业科研的国际影响力。

项目实施以来,先后聘请了800多名国外知名专家来华讲学,支持1000多名中青年科学家赴国外进修和学习,扶持、凝聚了大批海外学子归国参与技术引进和研发。在引进技术的同时,支持培养了一大批有真才实学、勤奋务实、带动能力强、紧跟世界农业科技发展前沿的中青年农业专家,其中一批专家已成为我国农业科研领域的领军人物和骨干力量,部分已经成为国际农业科技界的领军人物,华中农业大学的张启发院士、傅廷栋院士、邓秀新院士,中国农业大学的李宁院士和中国水产科学研究院的雷霁霖院士等都在执行948项目中做出过突出贡献。

948项目还积极支持国内部分农业研究机构和人员参与国际重大农业科技合作研究,通过分析研究与国际主要农业科研机构建立起良好的交流关系和工作机制,为今后我国在更高层次、更广领域开展农业科技国际合作奠定了坚实基础。截止目前,我国已与世界上80多个国家、地区在农业科技领域建立了广泛的合作与交流关系,并与其中30多个国家签署了合作协议与备忘录。特别是与国际农业研究磋商组织下属的十五个中心都已建立了密切的工作关系,鉴于我国农业科技的水平和影响力,国际马铃薯中心即将在中国北京建立亚太区域研究中心。

背景资料:“948”计划

为了缩小我国农业科技与世界先进水平的差距,1994年8月,经时任国务委员、国家科委主任宋健同志提议,国务院批准,从“九五”开始组织实施“引进国际先进农业科学技术计划”(简称“948”计划)。该计划由农业部、水利部、国家林业局、财政部共同组织实施。根据部门职能分工,农业部主要承担种植业、畜牧业、水产业等领域的技术引进工作。在1996-2009年的14年间,中央财政总计投入资金14.15亿元,立项1300余项。先后从40多个国家和地区引进各类先进农业技术1500多项,种质资源80000多份,仪器设备等1300余套(台、件)。这些成果有的直接应用于农业生产,有的通过消化吸收再创新在农业生产中发挥作用。通过项目的实施,有力促进了我国农业科技水平的提升,对推动农业结构调整,保障农产品有效供给,促进粮食增产、农民增收和农业增效做出了重要贡献。